Commit 54793bc9 authored by Ngan Thi Dong's avatar Ngan Thi Dong

update README

parent 32795d96
......@@ -40,12 +40,12 @@ and `eval_epmda_original.py` with corresponding arguments for the original evalu
For feature calculation, please refer to the *.py files in epmda folder.
4. To run all the model with the **NEW** dataset, the following files are needed:
m-d.csv: store the association matrix where rows are miRNAs and columns are diseases
miRNA-disease.txt: store miRNA-disease association list
miRNA_seq.csv: the miRNAs sequence similarity matrix
disease_sim.csv: the disease semantic similarity.
disease_sim2.csv: the disease semantic + phenotype similarity
disease_not_found_list.txt: list of ids of diseases that are not found in MESH
- m-d.csv: store the association matrix where rows are miRNAs and columns are diseases
- miRNA-disease.txt: store miRNA-disease association list
- miRNA_seq.csv: the miRNAs sequence similarity matrix
- disease_sim.csv: the disease semantic similarity.
- disease_sim2.csv: the disease semantic + phenotype similarity
- disease_not_found_list.txt: list of ids of diseases that are not found in MESH
To calculate disease semantic similarity from MESH ontology, disease GIP or miRNA sequence/functiona/GIP kernel similarity, please use the code provided in data/preparation folder.
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